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Sequences
of probes used for analysis of cytoplasmic types
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LOCUS AF095274 2787 bp DNA PLN 05-JAN-1999 DEFINITION Solanum tuberosum ribosomal protein subunit 5 (rpl5) gene,partial cds; ribosomal protein small subunit 14 (rps14) pseudogene; and apocytochrome b (cob) gene, partial cds; mitochondrial genes encoding mitochondrial proteins. ACCESSION AF095274 KEYWORDS . SOURCE potato. ORGANISM Mitochondrion Solanum tuberosum Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Asteridae; Solananae; Solanales; Solanaceae; Solanum; Potatoe; section Petota. REFERENCE 1 (bases 1 to 2787) AUTHORS Loessl,A., Adler,N., Horn,R., Frei,U. and Wenzel,G. TITLE Chondriome type characterization of potato mt alpha, beta, gamma, delta, epsilon and novel plastid-mitochondrial configurations in somatic hybrids JOURNAL Theor. Appl. Genet. (1999) In press REFERENCE 2 (bases 1 to 2787) AUTHORS Loessl,A., Adler,N., Horn,R., Frei,U. and Wenzel,G. TITLE Direct Submission JOURNAL Submitted (24-SEP-1998) Lehrstuhl fuer Pflanzenbau und Pflanzenzuechtung, Technical University Munich, Am Hochanger 2, 85350 Freising, Germany FEATURES Location/Qualifiers source 1..2787 /organism="Solanum tuberosum" /mitochondrion /db_xref="taxon:4113" /note="type: beta" gene <1..508 /gene="rpl5" misc_feature 1..2787 /note="probe for determination of different mitochondrial DNA rearrangements" CDS <1..508 /gene="rpl5" /codon_start=2 /product="ribosomal protein subunit 5" /translation="DPLLKPNHANVMEVPGSCKIIVVPKTAPSIKNGKLAMEIPCGQK LKQRASTGKSFRSNPFLGSNKDKKGYVSDLARQSTLRGHGMSHFLVRISTVMSLLDSP LEIRERSIQFSMETEFCEFSPELEDHFEIFEHIPGFNVTIVTSANTQDETLPPWSGFL QKDEGETQ" gene 510..817 /note="ribosomal protein small subunit 14" /gene="rps14" /pseudo misc_feature 584..1566 /note="probe for determination of mitochondrial type alpha, beta, gamma, delta" gene 2152..>2787 /gene="cob" CDS 2152..>2787 /gene="cob" /codon_start=1 /product="apocytochrome b" /translation="MTIRNQRLSLLKQPISSTLNQHLIDYPTPSNLSYWWGFGSLAGI CLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMHANGASMFFIVVHLH IFRGLYHASYSSPREFVRCLGVVIFLLMIVTAFIGYVLPWGQMSFWGATVITSLASAI PVVGDTIVTWLWGGFSVDNATLNRFFSLHHLLPFILVGASLLHLAALHQYGS" Solanum tuberosum ribosomal protein subunit 5 (rpl5) gene,partial cds; ribosomal protein small subunit 14 (rps14) pseudogene; and apocytochrome b (cob) gene BASE COUNT 783 a 614 c 628 g 761 t 1 others ORIGIN 1 ggatccgttg ctcaaaccga atcacgccaa cgttatggaa gttcctggat cgtgtaaaat 61 aatagtagta ccaaagacag caccttctat caaaaatgga aaattggcta tggagattcc 121 gtgcggccag aaattaaaac aaagggcttc aacaggaaag tcgtttcgat ccaatccatt 181 cttggggtcn aataaagaca aaaaaggata tgtcagtgac ctagcacgac aaagcactct 241 ccgagggcat ggaatgtcac attttttggt cagaatatcc acagtaatgt ctctgttaga 301 ttctccgctc gaaataaggg aaaggtcaat tcaattctcg atggaaacgg aattttgcga 361 attctccccc gaactggaag atcatttcga gatcttcgaa catattccag ggttcaatgt 421 tactattgta acttcggcca acacacaaga tgagacttta ccaccgtgga gcggcttttt 481 gcaaaaagat gagggggaaa ctcagtaaga tgtcggagaa gcgaaatata cgagatcaca 541 aacgtagatt gctcgcggct aggctaaata tgaattgaga cgaaagcttt ataaagccct 601 ttgtaaagat cccgatcttc ctagtgatat gcgggacaaa catcgttcta agttgtccaa 661 gttgccaaga aagagttcct ttgcacgagt aagaaaccga tgtatttaca cgggtcgccc 721 tcgttccgta tatgagttct tccaaatttc tcgtatcctt tttcgtggat tagcatctcg 781 aggtcctttg atgggcataa agaaatcgtc ttggtagcaa ccaccaaacc aatagaacaa 841 gggttcgctc cgcagcaggt ctacaagcaa ggtaagtagg tccattacca gccggctccg 901 gaccgaaaag acctaacgga ctaatccctt atctaggatc gtagatgcta acggggcggg 961 aatcgaagtg ggggacccct ctaccgcctg tgtctatctc ctgtcaagta tgctccccag 1021 acatagacta cgtacagggt agtactcttg gaaagataga atatcaccgc gtgaacataa 1081 cattacatgt tgttacgaat gtaactcccg aaggatcgac cactattcta aatatagtaa 1141 ggcggagaac tgttgttcag tggagcgccg gagtgcggag gttgttccca tcattgaagt 1201 cagggtgtgg gactgagcct tccgaatgag aaagaagaaa agtgcttagt ttcgttggaa 1261 aaaccaacgc aaatatcata ttgactttct ctcgccctac ttctaaagat agatagaaag 1321 ggttggagag aatttcagaa agtcattctc tcctttctaa agctgcgcaa ggcggccccc 1381 ccagaacaaa gccaccctct tttcccccct ttaatgaagg accctcgctc gcttctattc 1441 atttgtggtc tggacccgat tttttttcaa tttcgagaat caaccaacgg aaaatccgta 1501 gccaggtgac tcacagctcc ctctcgccca aataaatgaa atgggatgaa tcaaatcaat 1561 aagctttttg attgattcag ggcgcagcga agccaaattc aatcaaggaa agggggctta 1621 cttttcctga ggctgattca tcctattcaa atttagctat gctaatggaa gaggaaaagt 1681 tttcagatga gatggacccc caagagatga gcgagaaccc ccaattgctt aggggtcgca 1741 ctctgtcccg cttggtggac gaaatcttct ctcctttttg aattctttct cccacacacc 1801 ctttttgccc tctttcgccg aggaggaaag aataatcttc caagcggaca gagacctaaa 1861 tttccattag attcattcct aagcttgctt tgttgcagca agatgatcag tccgagagtg 1921 ctggagagaa gagaaagcgg taaaaacctc tcttattcgg tcaccgagaa gtcggacgac 1981 tcttcagtaa cccagggtga tccgacccct tcgacgcttt tttcgctgta taccccctcc 2041 atccttagga ggtggaagaa agggtactca cattttaata catagtaggc ccccagaacg 2101 ctaaaaggtg ggggaacaag agttgtcacg atagaaaaga gaaaaaaaga aatgactata 2161 aggaaccaac ggctctctct tcttaaacaa cctatatctt ccacacttaa tcagcatttg 2221 atagattatc caaccccgag caatcttagt tattggtggg ggttcggttc gttagcgggt 2281 atttgtttag tcattcagat agtgactggc gtttttttag ctatgcatta cacacctcat 2341 gtggatctag ctttcaacag cgtagaacac attatgagag atgttgaagg gggctggttg 2401 ctccgttata tgcatgctaa tggggcaagt atgtttttca ttgtggttca cctgcatatt 2461 tttcgtggtc tatatcatgc cagttatagc agtcctaggg aatttgttcg gtgtctcgga 2521 gttgtaatct tcctattaat gattgtgaca gcttttatag gatatgtcct accttggggt 2581 cagatgagct tttggggagc tacagtaatc acaagcttag ctagcgccat acctgtagta 2641 ggagatacca tagtgacttg gctttggggt gggttctccg tggacaatgc caccttaaat 2701 cgttttttta gtcttcatca tttactcccc tttattttag taggcgccag tcttcttcat 2761 ctggccgcat tgcatcaata tggatcc //
LOCUS AF095275 2195 bp DNA PLN 16-JAN-1999
ACCESSION AF095275 KEYWORDS . SOURCE potato. ORGANISM Mitochondrion Solanum tuberosum Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Asteridae; Solananae; Solanales; Solanaceae; Solanum; Potatoe; section Petota. REFERENCE 1 (bases 1 to 2195) AUTHORS Loessl,A., Adler,N., Horn,R., Frei,U. and Wenzel,G. TITLE Chondriome type characterization of potato mt alpha, beta, gamma, delta, epsilon and novel plastid-mitochondrial configurations in somatic hybrids JOURNAL Theor. Appl. Genet. (1999) In press REFERENCE 2 (bases 1 to 2195) AUTHORS Loessl,A., Adler,N., Horn,R., Frei,U. and Wenzel,G. TITLE Direct Submission JOURNAL Submitted (24-SEP-1998) Lehrstuhl fuer Pflanzenbau und Pflanzenzuechtung, Technical University Munich, Am Hochanger 2, 85350 Freising, Germany FEATURES Location/Qualifiers source 1..2195 /organism="Solanum tuberosum" /mitochondrion /db_xref="taxon:4113" /note="type: beta" repeat_region 1..102 misc_feature 1..2195 /note="probe for determination of mitochondrial type alpha, beta, gamma, delta" gene 78..1271 /gene="rps10" CDS join(78..384,1174..1271) /gene="rps10" /codon_start=1 /product="ribosomal protein subunit 10" /translation="MRQRRALRRVSQKERPPKVTTTKIGIVIRSFDHPFLENHFWGLP PYTRKIGLPESRVLYTVLRSPHIDKKSREQFFMKIKKEFLVIKTERHELRKKFFRLKR PQYEILFSCKTRSDKGKLQRLLRNKILALTLS" gene 1434..>2195 /gene="coxI" CDS 1434..>2195 /gene="coxI" /codon_start=1 /exception="RNA editing" /transl_except=(pos:1434..1436,aa:Met) /product="cytochrome oxidase subunit I" /translation="MTNPVRWLFSTNHKDIGTLYFIFGAIAGVMGTCFSVLIRMELAR PGDQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGSGNWSVPILIGAPDMAFPRLNN ISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLSGITSHSGGAVDLAISSLHLSGVSS ILGSINFITTIFNMRGPGMTMHRSPLFVWSVLVTAFPLLLSLPVLAGAITMLLTDRNF NTTFSDPAGGGDPILYQHLFWFFGHPEVYIPILPGS"
DEFINITION Solanum tuberosum ribosomal protein subunit 10(rps10)gene, complete cds; and cytochrome oxidase subunit I (coxI) BASE COUNT 599 a 491 c 538 g 567 t ORIGIN 1 ggatcctatc ctaaaggaga aggaggagga gtaggagcta gctttagggg cggaatcgaa 61 tgattacgag ataaacaatg agacaaagga gagcacttag acgagtcagc caaaaagaaa 121 gaccaccaaa agtaacgacc accaagatag gcatagtaat tcgatctttt gatcacccat 181 ttttggaaaa ccatttttgg gggcttccgc cttacacacg gaagattgga ttgcctgaat 241 cacgagtctt atatactgtg ttacgatcac ctcatattga taaaaagtcc agagaacaat 301 tttttatgaa aataaagaaa gaatttctgg tcataaaaac agaaaggcat gaattgcgca 361 agaagttctt tcggttaaaa cgccgtgcga ctcggaggac ataagacttc ttggtcaagc 421 caaaaagatt gccgactgga tgctcctacc ccaccatgcc tggcccttta tcttacctta 481 agaagaaaga ggaggtatga agcgtgggac agaatgcaag aagtgtatga tacaacagat 541 aaccttaagg agtggcggca accctcttga ttgatcaacg cgagtgaact gtgcttagac 601 gcttcgtaaa accgcaccga tctacgagag gagctgatag atgagtaggc ttcccctttc 661 gattcacgga atgtgatctg ggacacgatg ggagtttgcg tgtctcggta ggaaagatat 721 caccggagta tagcacaaga tcgccttttc ttgctgccat ggggtcgacc tgtgaacaag 781 gtaaacccaa tgggaaccaa aaaacggggg gtaccgcatt gggcagaaga cgatccaaaa 841 agcgaaggct cacccacctg aaggaagggg gtgagatagg caagaggtag cttgcttcca 901 agccggcccg gccgcgagga atcaagagat ctttgccggt gctgacttgg atctcgggtg 961 acggaataag gcggccagaa gcgacgagca atcgcggtcg aagcttggct ctagccgata 1021 cgctagctgt aagcttggct acagcgaacg cttaccaagc gcgaaggaaa gggccttcgc 1081 cacttgagcc gtatgcgggg gaactcgcac gtgcggttct taggggggga gagctagtag 1141 gagccatccc atcccaatag cgtatatttg gagctcaata tgaaatccta ttttcttgca 1201 agacccgttc ggataaggga aaactccaga gattgcttcg aaataagatc cttgcgttga 1261 ccctttcctg aaccagaacc gggggaggat gagaggaaag ggggatcaaa atgtcccatc 1321 aataaagttc gggctttcca ttcttcctcc ccccccctca ctcccccttt ttcaataaat 1381 aagccccgcg ggcccctctc tgataaggaa ggaaacgaaa taatctcaat tttacgacaa 1441 atccggtccg atggctgttc tccactaacc acaaggatat agggactctt tatttcatct 1501 tcggtgccat tgctggagtg atgggcacat gcttctcagt actgattcgt atggaattag 1561 cacgacccgg cgatcaaatt cttggtggga atcatcaact ttataatgtt ttaataacgg 1621 ctcacgcctt tttaatgatc ttttttatgg ttatgccggc gatgataggt ggatctggta 1681 attggtctgt tccgattctg ataggtgcgc ctgacatggc atttccacga ttaaataata 1741 tttcattctg gttgttgcct ccaagtctct tgctcctatt aagctcagcc ttagtagaag 1801 tgggtagcgg cactgggtgg acggtctatc cgcccttaag tggtattacc agccattctg 1861 gaggagcagt tgatttagca atttctagtc ttcatctatc tggtgtttca tccattttag 1921 gttctattaa ttttataaca actatcttca acatgcgtgg acctggaatg actatgcata 1981 gatcacctct atttgtgtgg tccgttctag tgacagcatt cccactttta ttatcacttc 2041 cggtactggc aggggcaatt accatgttat taaccgatcg aaactttaat acaacctttt 2101 ctgatcccgc tggaggggga gaccccatat tataccagca tctcttttgg ttcttcggtc 2161 atccagaggt gtatattccc attctgcctg gatcc //
LOCUS AF095278 1555 bp DNA PLN 05-JAN-1999 DEFINITION Solanum tuberosum ribosomal
protein large subunit 2 (rpl2)
KEYWORDS . SOURCE potato. ORGANISM Mitochondrion Solanum tuberosum Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Asteridae; Solananae; Solanales; Solanaceae; Solanum; Potatoe; section Petota. REFERENCE 1 (bases 1 to 1555) AUTHORS Loessl,A., Adler,N., Horn,R., Frei,U. and Wenzel,G. TITLE Chondriome type characterization of potato mt alpha, beta, gamma, delta, epsilon and novel plastid-mitochondrial configurations in somatic hybrids JOURNAL Theor. Appl. Genet. (1999) In press REFERENCE 2 (bases 1 to 1555) AUTHORS Loessl,A., Adler,N., Horn,R., Frei,U. and Wenzel,G. TITLE Direct Submission JOURNAL Submitted (24-SEP-1998) Lehrstuhl fuer Pflanzenbau und Pflanzenzuechtung, Technical University Munich, Am Hochanger 2, 85350 Freising, Germany FEATURES Location/Qualifiers source 1..1555 /organism="Solanum tuberosum" /mitochondrion /db_xref="taxon:4113" /note="type: gamma" misc_feature 1..1555 /note="probe for determination of mitochondrial type alpha, beta, gamma, epsilon" repeat_region 335..417 /note="similar to Petunia sequence" misc_feature 335..726 /note="similar to substoichiometric recombinant mitochondrial DNA" gene 435..1325 /gene="rpl2" CDS 435..1325 /gene="rpl2" /codon_start=1 /product="ribosomal protein large subunit 2" /translation="MRQRRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDL KRSTSSIGIVERIEYAPNRSSRIAPVRWTGGGVRQRKCNTIEEFAPPRKILESKSTTT TICGPFSFSSLPGKGDQRKVACFSPGRMATYVVFGLPTRMPFWSKSAFFTSKDAGSKK TCAKDVFFSALSSPKAKGETASLSFGSSFGFPRIAVAGAKPAFFAPRMREKVRGKNTF SLCEIRKWRTHSILWVHRIKRKAALSWQSFRRQETLGLVGASERNESKPKTDQGSLPA KPIGEGLKDGTRKVDRAPVV"
BASE COUNT 434 a 331 c 425 g 365 t ORIGIN 1 aagcttcatg ccgtagtcga agggcatctt cggagatact gcgcttctga ggatggattg 61 aaaaggtttc cttgtttgaa agagaaaaac aaggaagatt taacatattt tgcgcaacat 121 ttttctatta cggaattgga cattgataca aaaagcgaag cggaaatcgc ttcgctttct 181 gcctatttgg gtccatttcg taaaatagaa acactatttc acatgtattt tgacaaatac 241 ttcgagtcag actagagact gaagtagaag agtagaagat ggcctgagag aaggcggcct 301 ctctcgggct cgggaaagac aatttggccg agagtgttat gtaaaaagga ccaaggagga 361 tcctatccta aaggagaagg aggaggagta ggagctagct ttaggggcgg aatcgaatga 421 ttacgagata aacaatgaga caaaggagag cacttagaca attcactttg agtacaggga 481 agtctgctgg taggaattcc tcagggcgta ttacggtttt tcaccgaggg ggtggatcga 541 agcgattgca gcgaagaatt gatctgaaac gaagcacttc gtctataggc attgtagaaa 601 ggatagaata tgcgcctaat cgttcttctc gaatcgctcc agtacgatgg accggggggg 661 gggtccgcca gagaaaatgc aacacgatag aagagttcgc tccgccgcgt aagatcctcg 721 aatcaaaatc aaccacgact accatctgcg gtccattttc gttctcttcc ctgcccggga 781 agggggatca aagaaaggta gcttgcttct ctcctggacg gatggcgact tatgtagtgt 841 tcggccttcc taccagaatg cctttttggt cgaagagcgc cttttttact agtaaggacg 901 caggaagcaa aaaaacttgc gcgaaggacg ttttcttctc tgccctctcc tctccaaagg 961 ccaagggaga gactgcatcc ctttccttcg gtagctcttt tggtttccca aggatagcgg 1021 tagctggggc aaagcccgct ttcttcgctc cgcgaatgag agagaaagtc agaggaaaaa 1081 acacgttctc tctttgcgag atccgaaagt ggagaacgca tagcattcta tgggtacata 1141 ggatcaaacg taaagcagcg ctctcttggc agagttttag gcggcaagag actttagggc 1201 ttgttggagc ttctgagcgt aacgaatcga agccgaagac ggatcaaggt agcttgcctg 1261 ccaagccgat aggcgaaggg ctgaaggatg gaacgcgcaa agtagatcgt gcacctgtcg 1321 tgtgacccgt tggtcctaag caatgtcttg cgcgaagcga cccacttaga aaaagccccc 1381 ctttatgtta ggggagcact aaaatgcaac ttcgatcgga tgcgggtatc aaatcccgcc 1441 gctgagatgt ccagcggatt cctgggcctt gacgaatggc cggccacctt ttacgttaga 1501 agagcaaaag gcccagggca tagcaggatg aaccaatgtg aatgagtgta agctt //
LOCUS AF095276 2445 bp DNA PLN 14-MAR-1999 DEFINITION Solanum tuberosum NADH dehydrogenase subunit 1 (nad1) gene, exon & and partial cds; and ATP synthase subunit 6 (atp6) gene, complete cds; mitochondrial genes encoding mitochondrial proteins. ACCESSION AF095276 KEYWORDS . SOURCE potato. ORGANISM Mitochondrion Solanum tuberosum Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Asteridae; Solananae; Solanales; Solanaceae; Solanum; Potatoe; section Petota. REFERENCE 1 (bases 1 to 2445) AUTHORS Loessl,A., Adler,N., Horn,R., Frei,U. and Wenzel,G. TITLE Chondriome type characterization of potato mt alpha, beta, gamma, delta, epsilon and novel plastid-mitochondrial configurations in somatic hybrids JOURNAL Theor. Appl. Genet. (1999) In press REFERENCE 2 (bases 1 to 2445) AUTHORS Loessl,A., Adler,N., Horn,R., Frei,U. and Wenzel,G. TITLE Direct Submission JOURNAL Submitted (28-SEP-1998) Lehrstuhl fuer Pflanzenbau und Pflanzenzuechtung, Technical University Munich, Am Hochanger 2, 85350 Freising, Germany FEATURES Location/Qualifiers source 1..2445 /organism="Solanum tuberosum" /mitochondrion /db_xref="taxon:4113" gene <1..312 /gene="nad1" exon 55..312 /gene="nad1" /note="exon e" CDS <55..312 /gene="nad1" /codon_start=1 /product="NADH dehydrogenase subunit 1" /translation="GLCTSLSPGGWPPILDLPISKKIPGSIWFSIKVILFLFLYIWVR AAFPRYRYDQLMGLGRKVFLPLSLARVVPVSGVLVTFQWLP" gene 563..1729 /gene="atp6" CDS 563..1729 /gene="atp6" /codon_start=1 /product="ATP synthase subunit 6" /translation="MFPRIPRIFSFDEESLNSSATSATTSLQSTTTINDSSNGIFEDF PGLNPSSERIVELQSDIWAKLGELMPNKSAQEVLEAAEVLHGESNDIDFLDSLLKDLN QNGVAGEAYKDAVDLVKDLVSSPLEQFEIIPLIPMKIGNLYFSFTNPSLFMLLTLSLV LLLVYFVTKKGGGNSVPNAWQSLVELIYDFVLNPVNEQIGGLSGNVKQKFSPRISVTF TFSLFCNPQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQKNGLHFLSFLLPAGVP LPLAPFLVLLELIPYCFRALSSGIRLFANMMAGHSSVKILSGFAWTMLCMNDLFYFIG DLGPLFIVLALTGLELGVAISQAHVSTILICIYLNDAINLHQSAYFFIIEQKRV"
DEFINITION Solanum tuberosum NADH dehydrogenase subunit 1 (nad1) gene, exon e and partial cds; and ATP synthase subunit 6 (atp6) gene, complete BASE COUNT 643 a 504 c 516 g 782 t ORIGIN 1 ccaccaccta tcaggcccga cgagcggtcc acggagctgc atccctactc acctggtcta 61 tgcacatcgc tctctccagg aggttggccg cctatcctag atcttcccat ttccaagaag 121 atcccgggct cgatctggtt tagtatcaag gtgattcttt ttctgttcct atatatatgg 181 gtccgtgcag catttccacg atatcgttat gatcaattaa tgggacttgg ccggaaagtg 241 ttcttgcctc tatcattagc tcgggtagtc cccgtttctg gtgttttagt cacctttcaa 301 tggctccctt aattatgtgc gaggaattgc cctattgagt aatgggaagc gggctagccc 361 ccgaaaatgc cccgcccgta agttcctttg tcgttgggga aaaaaaagaa agatattttt 421 tttagaaaag aaattctgcc ttttttgatc ccatgctttc cgttggtcaa caaccaacta 481 aatctatact tcttcactac tcgtacaggc ttgacggagt gaagctgtat tgagggaatc 541 gttttgtctc aactaaatca atatgtttcc aagaattccg cgtatctttt cctttgatga 601 agaaagtctc aattccagtg ctacatctgc gacaacttct cttcaatcca caacaactat 661 taacgattct tctaatggta tttttgagga ctttccaggt cttaaccctt ccagtgaacg 721 tatagtggaa cttcaatctg atatatgggc gaaattagga gagttgatgc ctaacaagag 781 tgcccaagaa gttctggaag cggccgaagt tctacatggc gaaagcaacg atattgactt 841 tcttgactcc ctattgaaag atttgaatca aaacggagta gcgggtgaag cctataaaga 901 tgcagtggat ctagtgaaag atctcgtctc cagcccactt gaacaatttg aaataattcc 961 attgattcct atgaaaatag gaaacttata tttctcattc acaaatccat ctttgtttat 1021 gctactaact ctcagtttgg tcctactttt ggtttatttt gttactaaaa agggaggagg 1081 aaactcagta ccaaatgctt ggcaatcctt ggtagagctt atttatgatt tcgtgctgaa 1141 cccggtaaac gaacaaatag gtggtctttc cggaaatgtt aaacaaaagt tttcccctcg 1201 catctcggtc acttttactt tttcgttatt ttgtaatccc cagggtatga taccttatag 1261 cttcacagtt acaagtcatt ttctcattac tttgggtctc tcattttcta tttttattgg 1321 cattactata gtgggatttc aaaaaaatgg gcttcatttt ttaagcttct tattacccgc 1381 gggagtcccg ctgccattag cacctttttt agtactcctt gagctaatcc cttattgttt 1441 tcgagcatta agctcaggaa tacgtttatt tgctaatatg atggccggtc atagttcagt 1501 aaagatttta agtgggttcg cttggactat gctatgtatg aatgatcttt tctatttcat 1561 aggggatctt ggtcctttat ttatagttct tgcattaacc ggtctggaat taggtgtagc 1621 tatatcacaa gctcatgttt ctacgatctt aatctgtatt tacttgaatg atgctataaa 1681 tcttcatcaa agtgcttatt tttttataat tgaacaaaag cgagtctgaa tgggtatact 1741 tagtcgtgga gcattccgag tctttgcttt agggatcgtt cctgcgcatc tccttacttt 1801 atagcagtta ttgctccggt tccagaaggt atagctctcg cctcagcttt ttctttgaaa 1861 tcggagactg ttccaatttc ctactgagat aggcaagcgg agggagaact agacgtatct 1921 tgctaggcaa agacaggtta gaatggatag ctcgcgggtg ggattgacgg gatagatcac 1981 tattgcagaa ggaggtagaa ccgggggaag aattatggct ataaaggtcc tcgccctctt 2041 aggcacatgg ttctaaagat tcaatctcaa agcggtacta aagattaggc agaagaagaa 2101 ctataactag aattcttcgc ccctcccctt gtaccaagaa gcaagttcgg aacataagga 2161 taatgggctc gtctattata agttattagt ttacggagct atctcagata tctcgagtaa 2221 ggagacggga cgggtttgat agttagagtt ctatttctag gaaggaagag actatcggga 2281 agctcactct cggccgggct cgaagcagag ggtagaacgt aatatctctt gttggttcgg 2341 ctcatcaagc tattacaaaa gagtcctcga agaaagaagc catttttacg gtattttcgc 2401 ttccagtccg taattagatc ttcaagctta gtccagtccg gatcc //
DEFINITION Solanum tuberosum somatic fusion
hybrids NADH dehydrogenase subunit 1 (nad1) gene, exon
e and partial cds; and ATP synthase subunit 6
mitochondrial proteins. ACCESSION AF095277 KEYWORDS . SOURCE potato. ORGANISM Mitochondrion Solanum tuberosum Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Asteridae; Solananae; Solanales; Solanaceae; Solanum; Potatoe; section Petota. REFERENCE 1 (bases 1 to 2196) AUTHORS Loessl,A., Adler,N., Horn,R., Frei,U. and Wenzel,G. TITLE Chondriome type characterization of potato mt alpha, beta, gamma, delta, epsilon and novel plastid-mitochondrial configurations in somatic hybrids JOURNAL Theor. Appl. Genet. (1999) In press REFERENCE 2 (bases 1 to 2196) AUTHORS Loessl,A., Adler,N., Horn,R., Frei,U. and Wenzel,G. TITLE Direct Submission JOURNAL Submitted (28-SEP-1998) Lehrstuhl fuer Pflanzenbau und Pflanzenzuechtung, Technical University Munich, Am Hochanger 2, 85350 Freising, Germany FEATURES Location/Qualifiers source 1..2196 /organism="Solanum tuberosum" /mitochondrion /db_xref="taxon:4113" /note="somatic hybrid derived from alpha (+) epsilon fusion" gene <1..312 /gene="nad1" exon 55..312 /gene="nad1" /note="exon e" CDS <55..312 /gene="nad1" /codon_start=1 /product="NADH dehydrogenase subunit 1" /translation="GLCTSLSPGGWPPILDLPISKKIPGSIWFSIKVILFLFLYIWVR AAFPRYRYDQLMGLGRKVFLPLSLARVVPVSGVLVTFQWLP" gene 563..1729 /gene="atp6" CDS 563..1729 /gene="atp6" /codon_start=1 /product="ATP synthase subunit 6" /translation="MFPRIPRIFSFDEESLNSSATSATTSLQSTTTINDSSNGIFEDF PGLNPSSERIVELQSDIWAKLGELMPNKSAQEVLEAAEVLHGESNDIDFLDSLLKDLN QNGVAGEAYKDAVDLVKDLVSSPLEQFEIIPLIPMKIGNLYFSFTNPSLFMLLTLSLV LLLVYFVTKKGGGNSVPNAWQSLVELIYDFVLNPVNEQIGGLSGNVKQKFSPRISVTF TFSLFCNPQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQKNGLHFLSFLLPAGVP LPLAPFLVLLELIPYCFRALSSGIRLFANMMAGHSSVKILSGFAWTMLCMNDLFYFIG DLGPLFIVLALTGLELGVAISQAQVSTILICIYLNDAINLHQSAYFFIIEQKRV" misc_feature 1943..2196 /note="substoichiometric additional atp6 sequence"
DEFINITION Solanum tuberosum somatic fusion hybrids NADH dehydrogenase subunit 1 (nad1) gene, exon e and partial cds; and ATP synthase subunit 6 (atp6) gene, complete cds; mitochondrial genes encoding mitochondrial proteins. BASE COUNT 550 a 476 c 438 g 732 t ORIGIN 1 ccaccaccta tcaggcccga cgagcggtcc acggagctgc atccctactc acctggtcta 61 tgcacatcgc tctctccagg aggttggccg cctatcctag atcttcccat ttccaagaag 121 atcccgggct cgatctggtt tagtatcaag gtgattcttt ttctgttcct atatatatgg 181 gtccgtgcag catttccacg atatcgttat gatcaattaa tgggacttgg ccggaaagtg 241 ttcttgcctc tatcattagc tcgggtagtc cccgtttctg gtgttttagt cacctttcaa 301 tggctccctt aattatgtgc gaggaattgc cctattgagt aatgggaagc gggctagccc 361 ccgaaaatgc cccgcccgta agttcctttg tcgttgggga aaaaaaagaa agatattttt 421 tttagaaaag aaattctgcc ttttttgatc ccatgctttc cgttggtcaa caaccaacta 481 aatctatact tcttcactac tcgtacaggc ttgacggagt gaagctgtat tgagggaatc 541 gttttgtctc aactaaatca atatgtttcc aagaattccg cgtatctttt cctttgatga 601 agaaagtctc aattccagtg ctacatctgc gacaacttct cttcaatcca caacaactat 661 taacgattct tctaatggta tttttgagga ctttccaggt cttaaccctt ccagtgaacg 721 tatagtggaa cttcaatctg atatatgggc gaaattagga gagttgatgc ctaacaagag 781 tgcccaagaa gttctggaag cggccgaagt tctacatggc gaaagcaacg atattgactt 841 tcttgactcc ctattgaaag atttgaatca aaacggagta gcgggtgaag cctataaaga 901 tgcagtggat ctagtgaaag atctcgtctc cagcccactt gaacaatttg aaataattcc 961 attgattcct atgaaaatag gaaacttata tttctcattc acaaatccat ctttgtttat 1021 gctactaact ctcagtttgg tcctactttt ggtttatttt gttactaaaa agggaggagg 1081 aaactcagta ccaaatgctt ggcaatcctt ggtagagctt atttatgatt tcgtgctgaa 1141 cccggtaaac gaacaaatag gtggtctttc cggaaatgtt aaacaaaagt tttcccctcg 1201 catctcggtc acttttactt tttcgttatt ttgtaatccc cagggtatga taccttatag 1261 cttcacagtt acaagtcatt ttctcattac tttgggtctc tcattttcta tttttattgg 1321 cattactata gtgggatttc aaaaaaatgg gcttcatttt ttaagcttct tattacccgc 1381 gggagtcccg ctgccattag cacctttttt agtactcctt gagctaatcc cttattgttt 1441 tcgagcatta agctcaggaa tacgtttatt tgctaatatg atggccggtc atagttcagt 1501 aaagatttta agtgggttcg cttggactat gctatgtatg aatgatcttt tctatttcat 1561 aggggatctt ggtcctttat ttatagttct tgcattaacc ggtctggaat taggtgtagc 1621 tatatcacaa gctcaagttt ctacgatctt aatctgtatt tacttgaatg atgctataaa 1681 tcttcatcaa agtgcttatt tttttataat tgaacaaaag cgagtctgaa tgggtatact 1741 tagtcgtgga gcattccgag tctttgcttt agggatcgtt cctgcgcatc tccttacttt 1801 atagcagtta ttgctccggt tccagaaggt atagctctcg cctcagcttt ttctttgaaa 1861 tcggagactg ttccaatttc ctactgagat aggcaagcgg agggagaact agacgtatct 1921 tgctaggcaa agacgggata gatcactaga aggaggtaga atctctagct aggactgttt 1981 tgaactaagc caatcggccc tagtttcgct gtaagccaac gcctttagtc gatctggttg 2041 ttagtctcat tcctctttct ttagtctagc tgacagcttt tcccttgact cgcctctatg 2101 cgcctacttt ccgaagtaaa tattctctct ttcctctaag ccgaaagcga gttccgttcc 2161 ctcgtttact gctttccgag aaagatatgc ccccgg //
LOCUS AF095279 1649 bp DNA PLN 05-JAN-1999 DEFINITION Solanum tuberosum NADH dehydrogenase subunit 3 (nad3) and ribosomal protein S12 (rps12) genes, mitochondrial genes encoding mitochondrial proteins, complete cds. ACCESSION AF095279 KEYWORDS . SOURCE potato. ORGANISM Mitochondrion Solanum tuberosum Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Asteridae; Solananae; Solanales; Solanaceae; Solanum; Potatoe; section Petota. REFERENCE 1 (bases 1 to 1649) AUTHORS Loessl,A., Adler,N., Horn,R., Frei,U. and Wenzel,G. TITLE Chondriome type characterization of potato mt alpha, beta, gamma, delta, epsilon and novel plastid-mitochondrial configurations in somatic hybrids JOURNAL Theor. Appl. Genet. (1999) In press REFERENCE 2 (bases 1 to 1649) AUTHORS Loessl,A., Adler,N., Horn,R., Frei,U. and Wenzel,G. TITLE Direct Submission JOURNAL Submitted (28-SEP-1998) Lehrstuhl fuer Pflanzenbau und Pflanzenzuechtung, Technical University Munich, Am Hochanger 2, 85350 Freising, Germany FEATURES Location/Qualifiers source 1..1649 /organism="Solanum tuberosum" /mitochondrion /db_xref="taxon:4113" gene 485..841 /gene="nad3" CDS 485..841 /gene="nad3" /codon_start=1 /product="NADH dehydrogenase subunit 3" /translation="MSEFAPICIYLVISPLVSLIPLGLPFLFSSNSSTYPEKSSAYEC GLDPSGDARSRVDIRFYLVSILFIIPDPEVTFSFPWAVPPNKIDPFGSWSMMAFLLIL TIGSLYEWKRGASDRE" gene 889..1260 /gene="rps12" CDS 889..1260 /gene="rps12" /codon_start=1 /product="ribosomal protein S12" /translation="MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCPRVSTRTPKK PNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKFHCIRGVK DLLGIPDRRRGRSKYGAEKPK"
DEFINITION Solanum tuberosum NADH dehydrogenase subunit 3 (nad3)
and ribosomal protein S12 (rps12) genes,
BASE COUNT 458 a 362 c 359 g 470 t ORIGIN 1 ggatccccaa ttctggattg atccgctgga cctcgaggcc atagtcaagg gccaccttga 61 accaaaggaa tttgatcctt ccgctctcgg ggaggtctta aaaagtctct ttaccgagag 121 gcataattct cccttctatg aggatgttaa gaccgctcaa gcagaccatt tccggggctt 181 tttaaaacaa aagcagcaag cccgagtgga aatgcaagaa aggcttaact ctcatactga 241 atgggaatat ctctcgaaaa ggatgacctc cttagcggaa gaaaaccgcg ctctacgtga 301 aaaaataagc attctcgcca ggaaaacccc ataaaattcg tctttgttgt cttgctgtcg 361 tgtcgtaaag tttcgttctt cgttcctctc ctcttggtcg agttacttcg ttcctatttc 421 ttgctttttt ttccggtatg ccgctccgcc agcaaggagc gaaagaacca agttttctgt 481 ggtgatgtca gaatttgcac ctatttgtat ctatttagtg atcagcccgc tagtttcttt 541 gatcccactc ggtcttcctt ttctattttc ttccaatagt tcgacctatc cagaaaaatc 601 gtcggcctac gaatgtggtc tcgatccttc cggtgatgcc agaagtcgtg ttgatataag 661 attttatctt gtttccattt tatttattat tcctgatccg gaagtaacct tttcctttcc 721 ttgggcagta cctcccaaca agattgatcc atttggatct tggtccatga tggccttttt 781 attgattttg acgattggat ctctctatga atggaaaagg ggtgcttcgg atcgggagta 841 accactagtg atagggcaaa aataggggga aggacaaagg aaagagcgat gcctacatta 901 aatcaattga ttcgtcatgg tagagaagaa aaacggcgca cggaccgtac tcgagctttg 961 gatcaatgtc cccagaagca aggagtatgc ccgcgtgttt caacgagaac accgaaaaaa 1021 cctaattcag ctccacgtaa gatagccaaa gtacggttga gcaatcgaca tgatatattt 1081 gctcacattc caggcgaagg tcataatttg caggaacatt ctatggtctt aataagagga 1141 ggtagagtga aagattcgcc aggtgtgaaa ttccattgta ttcgaggagt caaggatttg 1201 ctgggaattc cggatcgaag aagaggcaga tcaaaatatg gtgcggaaaa accaaaatag 1261 atatgaatgg aagatgcctc tggaactcct ttttctcggt aaggataggc acgaagtcac 1321 tcgactgaaa ggagagggaa caaccacaac gttacacccc aaaactatac ggagcccttc 1381 cgaatgacct agaatatagt ctacgtcact ctttcttggc tagtctagta gactatattc 1441 gcccgtggag gtgagtggag gaagctgtga agcttctaac tctaattacc aactcgggac 1501 tatattagta taaagcggca ttatcccttt actaaatcct ccctcgctta ccaccatgaa 1561 caagaccttt cccgatcaat tggtttttca ttatttaata agaaagatgg caaatcctac 1621 cattgtattt ccttttttca tttggatcc //
LOCUS AF095280 672 bp DNA PLN 05-JAN-1999 DEFINITION Solanum tuberosum abc type heme transporter subunit gene, mitochondrial gene encoding mitochondrial protein, partial cds. orf206 ACCESSION AF095280 KEYWORDS . SOURCE potato. ORGANISM Mitochondrion Solanum tuberosum Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Asteridae; Solananae; Solanales; Solanaceae; Solanum; Potatoe; section Petota. REFERENCE 1 (bases 1 to 672) AUTHORS Loessl,A., Adler,N., Horn,R., Frei,U. and Wenzel,G. TITLE Chondriome type characterization of potato mt alpha, beta, gamma, delta, epsilon and novel plastid-mitochondrial configurations in somatic hybrids JOURNAL Theor. Appl. Genet. (1999) In press REFERENCE 2 (bases 1 to 672) AUTHORS Loessl,A., Adler,N., Horn,R., Frei,U. and Wenzel,G. TITLE Direct Submission JOURNAL Submitted (28-SEP-1998) Lehrstuhl fuer Pflanzenbau und Pflanzenzuechtung, Technical University Munich, Am Hochanger 2, 85350 Freising, Germany FEATURES Location/Qualifiers source 1..672 /organism="Solanum tuberosum" /mitochondrion /db_xref="taxon:4113" /note="type: beta" misc_feature 1..672 /note="probe for determination of mitochondrial type alpha and beta" CDS <1..467 /note="orf206" /codon_start=3 /product="abc type heme transporter subunit" /translation="IPPLFPFPSAPFPRNEKEDGTLELYYLSAYCLPKILLLQLVGHR VIQISRVFRGFPMLQLPYQFGRSGMDRLNIPLGSLVLTLLCGIHSRSALGITSSSGWN SSQNPTTSPTSLPPTVSRTSIETEWFHVLSSIGYSSPFVSLFPISVSISSQD" BASE COUNT 148 a 162 c 130 g 232 t ORIGIN 1 ggatccctcc gttgtttcct tttccttccg caccttttcc tcgaaatgag aaagaagatg 61 gtacacttga attgtattat ttaagtgctt attgcttgcc aaaaatccta cttctacaat 121 tggtaggtca ccgggttatt caaataagtc gtgttttccg tggttttccc atgttacaac 181 ttccgtacca attcggtcga tccggaatgg atcggttaaa cattccatta ggtagcctgg 241 tcttgactct tctgtgtggt attcattctc gttcggctct tggaatcaca tccagcagtg 301 gttggaacag ctcgcaaaat ccaaccactt cacctacttc attgccccca accgtttctc 361 gtacctctat tgaaacagaa tggtttcatg ttctttcatc gattggttat tcctctccgt 421 tcgtatctct ttttccaatt tcggtctcga ttagttcaca agattgaatg gccaattctc 481 ctccgaaccc tcgattcatt ccgtggcgcg aaatccatca ttggcaaaac aattatttgg 541 ttatgccatt ttgggctttg ctctaaccga agctattgca tcgtttggcc caatgatggc 601 ctttttgatc tcattcgtat tccaagttcg ttagtaatcg tttacggtgg gtggataagc 661 aggaagggat cc //
LOCUS AF095281 1519 bp DNA PLN 05-JAN-1999 DEFINITION Solanum tuberosum apocytochrome b (cob) gene, mitochondrial gene encoding mitochondrial protein, partial cds. ACCESSION AF095281 KEYWORDS . SOURCE potato. ORGANISM Mitochondrion Solanum tuberosum Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Asteridae; Solananae; Solanales; Solanaceae; Solanum; Potatoe; section Petota. REFERENCE 1 (bases 1 to 1519) AUTHORS Loessl,A., Adler,N., Horn,R., Frei,U. and Wenzel,G. TITLE Chondriome type characterization of potato mt alpha, beta, gamma, delta, epsilon and novel plastid-mitochondrial configurations in somatic hybrids JOURNAL Theor. Appl. Genet. (1999) In press REFERENCE 2 (bases 1 to 1519) AUTHORS Loessl,A., Adler,N., Horn,R., Frei,U. and Wenzel,G. TITLE Direct Submission JOURNAL Submitted (28-SEP-1998) Lehrstuhl fuer Pflanzenbau und Pflanzenzuechtung, Technical University Munich, Am Hochanger 2, 85350 Freising, Germany FEATURES Location/Qualifiers source 1..1519 /organism="Solanum tuberosum" /mitochondrion /db_xref="taxon:4113" /note="type: beta" misc_feature 373..1519 /gene="cob" /note="probe for determination of mitochondrial type alpha, beta, gamma" gene 373..>1519 /gene="cob" CDS 373..>1519 /gene="cob" /codon_start=1 /product="apocytochrome b" /translation="MTIRNQRLSLLKQPISSTLNQHLIDYPTPSNLSYWWGFGSLAGI CLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMHANGASMFFIVVHLH MFRGLYHASYSSPREFVRCLGVVIFLLMIVTAFIGYVLPWGQMSFWGATVITSLASAI PVVGDTIVTWLWGGFSVDNATLNRFFSLHHLLPFILVGASLLHLAALHQYGSNNPLGV HSEMDKIASYPYFYVKDLVGWVAFAIFFSIWIFYAPNVLGHPDNYIPANPMSTPPHIV PEWYFLPIHAILRSIPDKSGGVAAIAPVFICLLALPFFKSMYVRSSSFRPIHQGIFWL LLADCLLLGWIGCQPVEAPFVTIGQISPLVFFLFFAITPILGRVGRGI"
BASE COUNT 369 a 320 c 333 g 497 t ORIGIN 1 gaattctttc tcccacacac cctttttgcc ctctttcgcc gaggaggaaa gaataatctt 61 ccaagcggac agagacctaa atttccatta gattcattcc taagcttgct ttgttgcagc 121 aagatgatca gtccgagagt gctggagaga agagaaagcg gtaaaaacct ctcttattcg 181 gtcaccgaga agtcggacga ctcttcagta acccagggtg atccgacccc ttcgacgctt 241 ttttcgctgt ataccccctc catccttcgg aggtggaaga aagggtactc acattttaat 301 acatagtagg gccccagaac gctaaaaggt gggggaacaa gagttgtcac gatagaaaag 361 agaaaaaaag aaatgactat aaggaaccaa cggctctctc ttcttaaaca acctatatcc 421 tccacactta atcagcattt gatagattat ccaaccccga gcaatcttag ttattggtgg 481 gggttcggtt cgttagcggg tatttgttta gtcattcaga tagtgactgg cgttttttta 541 gctatgcatt acacacctca tgtggatcta gctttcaaca gcgtagaaca cattatgaga 601 gatgttgaag ggggctggtt gctccgttat atgcatgcta atggggcaag tatgtttttc 661 attgtggttc acctgcatat gtttcgtggt ctatatcatg ccagttatag cagtcctagg 721 gaatttgttc ggtgtctcgg agttgtaatc ttcctattaa tgattgtgac agcttttata 781 ggatatgtcc taccttgggg tcagatgagc ttttggggag ctacagtaat cacaagctta 841 gctagcgcca tacctgtagt aggagatacc atagtgactt ggctttgggg tgggttctcc 901 gtggacaatg ccaccttaaa tcgttttttt agtcttcatc atttactccc ctttatttta 961 gtaggcgcca gtcttcttca tctggccgca ttgcatcaat atggatccaa taatccattg 1021 ggtgtacatt cagagatgga taaaattgct tcttaccctt atttttatgt aaaggatctt 1081 gtaggttggg tagcttttgc tatctttttt tccatttgga ttttttatgc tcctaatgtt 1141 ttggggcatc ccgacaatta tatacctgct aatccgatgt ccaccccgcc tcatattgtg 1201 ccagaatggt atttcctacc gatccatgcc attcttcgta gtatacctga caaatcggga 1261 ggtgtagccg caatagcacc agtttttata tgtctgttgg ctttaccctt ttttaaaagt 1321 atgtatgtac gtagttcaag ttttcgcccg attcaccaag gaatattttg gttgcttttg 1381 gcggattgct tactactagg ttggatcgga tgtcaacctg tggaggcacc ctttgttact 1441 attggacaaa tttctccttt agttttcttc ttgttctttg ccataacgcc cattctggga 1501 cgagttggaa gaggaattc //
LOCUS AF096321 2373 bp DNA PLN 05-JAN-1999 DEFINITION Solanum tuberosum ribosomal protein S3 (Yrps3) gene, partial cds; ribosomal protein L16 (Yrpl16) gene, complete cds; and cytochrome oxidase subunit 2 (coxII) gene, partial cds; mitochondrial genes encoding mitochondrial proteins. ACCESSION AF096321 SOURCE potato. ORGANISM Mitochondrion Solanum tuberosum Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Asteridae; Solananae; Solanales; Solanaceae; Solanum; Potatoe; section Petota. REFERENCE 1 (bases 1 to 2373) AUTHORS Loessl,A., Adler,N., Horn,R., Frei,U. and Wenzel,G. TITLE Chondriome type characterization of potato mt alpha, beta, gamma, delta, epsilon and novel plastid-mitochondrial configurations in somatic hybrids JOURNAL Theor. Appl. Genet. (1999) In press REFERENCE 2 (bases 1 to 2373) AUTHORS Loessl,A., Adler,N., Horn,R., Frei,U. and Wenzel,G. TITLE Direct Submission JOURNAL Submitted (02-OCT-1998) Lehrstuhl fuer Pflanzenbau und Pflanzenzuechtung, Technical University Munich, Am Hochanger 2, 85350 Freising, Germany FEATURES Location/Qualifiers source 1..2373 /organism="Solanum tuberosum" /mitochondrion /db_xref="taxon:4113" /note="somatic hybrid from alpha (+) epsilon fusion" gene <1..458 /gene="Yrps3" CDS <1..458 /gene="Yrps3" /codon_start=3 /product="ribosomal protein S3" /translation="IPYGYNYYLNEVQKMRSLLYNRTNTNTLIESVKIKSVYQSASPI AQDISFQPRNKTRSFRSIFSQIVKDIPLVMKKGVEGIRICCSGRLEGAEIARTECGKY GKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYSKKKGGRAISETYEI" misc_feature 241..1870 /note="probe for differentiation between mitochondrial type alpha, beta, gamma, delta, epsilon" gene 349..864 /gene="Yrpl16" CDS 349..864 /gene="Yrpl16" /codon_start=1 /product="ribosomal protein L16" /translation="MLLRKYLLVTESQVSKCGFHIVKKRGDVLYPKRTKYSKYRKGRC SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGHFHRAMSGQFPRNGKIWV RVLADIPITGKPSEVRMGRGKGNPTGWIARVSRGQILFEMDGVSLSNARQAATLAAHK LCSSTKFVQWS" misc_feature 957..1050 /note="similar to atp6 encoded by GenBank Accession Number AF095276" gene <1109..>2373 /gene="coxII" CDS 1109..>1490 /gene="coxII" /codon_start=1 /product="cytochrome oxidase subunit 2" /translation="MIVLEWLFLTIAPCDAAEPWQLGSQDAATPIMQGITDLHHDVFF FVIPILVFVSWILGRALWHFHYKKNPIPQRIVHGTTIEILRTIFPSIIPMFIAIPSFA LLYSMDEVVVDPAITIKAIGHQWYR" exon 1109..1490 /gene="coxII" /number=1 repeat_region 1914..1920 /note="recombination repeat" repeat_region 1945..1952 /note="recombination repeat" DEFINITION Solanum tuberosum ribosomal protein S3 (Yrps3)
gene, partial;
BASE COUNT 683 a 482 c 557 g 651 t ORIGIN 1 gaattccgta cgggtacaac tattatttga acgaagtgca aaaaatgcga tctttgttgt 61 ataatagaac aaacactaat accttaattg aatcggtcaa gatcaaatct gtttatcaaa 121 gtgcttctcc gattgctcaa gacatctctt ttcaaccgag gaacaaaaca agatcatttc 181 gttccatttt tagtcaaata gtgaaggata ttccattagt aatgaaaaag ggggtggagg 241 ggatccgtat atgttgttca ggtcgattag aaggtgcaga aatagctaga actgaatgcg 301 gaaagtatgg aaaaacatct cgtaatgtat ttaaccagaa aatagattat gctcctgcgg 361 aagtatctac tcgttacgga atctcaggtg tcaaagtgtg gatttcatat agtaaaaaaa 421 aggggggacg tgctatatcc gaaacgtacg aaatatagta aatatcgtaa aggcagatgt 481 agtaggggtt gcaaaccgga cggtacacaa cttggttttg gaagatatgg cactaaaagt 541 tgtagagctg gtcgtctttc atatcgagcc attgaagcag cgcgtcgtgc tataatcgga 601 cacttccatc gtgctatgag cggacaattc ccaagaaatg gtaagatatg ggtaagagtt 661 ctcgcagata ttcctattac cgggaaacct tcagaagtaa gaatgggaag aggaaaagga 721 aatcctacgg gttggattgc tcgtgtgtcc aggggacaaa tcctatttga aatggatggt 781 gtgagtttgt caaatgctcg acaagccgct acattagcgg cgcataaact atgttcgtca 841 accaagtttg ttcagtggtc gtaagcttat taatctgacc caaattggta cacgccaatt 901 tccattttcg cggattgaaa gagccatcaa tgactagaat ctccttttag attcgaaatt 961 cttcgttttt ttctcccatg ctttccgttg gtcaacaacc aactaaagtg ctctatactt 1021 cttcactact cgtacaggga aggtggaaga aattcagtct ctcttttttt tggggggagc 1081 agagcagtca aagaatgaac caaaccaaat gattgttcta gaatggctat tcctcacaat 1141 tgctccttgt gatgcagcgg aaccatggca attaggatct caagacgcag caacacctat 1201 aatgcaagga ataacagact tacatcacga tgtctttttc ttcgttattc cgattttggt 1261 tttcgtatca tggatcttgg gtcgcgcttt atggcatttc cactataaaa aaaatccaat 1321 cccgcaaagg attgttcatg gaactactat cgagattctt cggaccatat ttcctagtat 1381 catccctatg ttcattgcta taccatcatt tgctctgtta tactcaatgg acgaggtagt 1441 agtagatcca gccattacta taaaagctat tggacatcaa tggtatcgga gtgcgcctct 1501 tcacgagggt gattaaagtg caacgaaatg ccttaaagtt gaatagggtt cgcgaagcat 1561 ctggcttacc ggtaatctcc cattcccgcc gtcgagagac tttaataact atagcatgcc 1621 agaaacgggg agttgaggtg gttagaccta taccccgaaa tgctcccagc ataggagcct 1681 atggttccat tcttgttgtt gctggaggta cacatccctc ttctcggtgt ggaacgatat 1741 acgagaaata gatgctcagc ctgcaatgtc cgataacggc gctgaagtag tgaatctatc 1801 ggcaccatag cagtggtata caactttgga cctaacagcc ggcccagtaa cctttcggaa 1861 tgggggatcc ccgttggcaa caaccacggt agtagttgcg gaactactgg gccggagagg 1921 gagcggaaag ccacttgact gtaaggagag gacaacctct tgttcctgct cctctttctt 1981 cgcttcgggg acggaggtcc tacggtaggt aacagcaggc acaagcaagt tgaccgaagg 2041 ggaccagcgc ttctactcct ccaccgagga gccgttcttg cgagaagcaa gggatgtcgt 2101 gaacggtggg aggtcacaga gaattgacct attcatagag tgatcctatg atcgatacag 2161 gatatagact atctcattct ttattctatt ctatttctga aaaaaaaaag aagggtgact 2221 caacttctca gctagagttg gtggtgggac ctgttggcat aatgcacgct ggaacgtggg 2281 aattcgaggt ctcatgaact actactaaaa accaaccttg tttttgtttt gtttgtggac 2341 aaacgatatc cggtcaggcc tatggctgga tcc//
LOCUS AF097743 740 bp DNA PLN 05-JAN-1999 DEFINITION Solanum tuberosum cytochrome c biogenesis protein gene, "orf577"mitochondrial gene encoding mitochondrial protein, partial cds. ACCESSION AF097743 KEYWORDS . SOURCE potato. ORGANISM Mitochondrion Solanum tuberosum Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Asteridae; Solananae; Solanales; Solanaceae; Solanum; Potatoe; section Petota. REFERENCE 1 (bases 1 to 740) AUTHORS Loessl,A., Adler,N., Horn,R., Frei,U. and Wenzel,G. TITLE Chondriome type characterization of potato mt alpha, beta, gamma, delta, epsilon and novel plastid-mitochondrial configurations in somatic hybrids JOURNAL Theor. Appl. Genet. (1999) In press REFERENCE 2 (bases 1 to 740) AUTHORS Loessl,A., Adler,N., Horn,R., Frei,U. and Wenzel,G. TITLE Direct Submission JOURNAL Submitted (07-OCT-1998) Lehrstuhl fuer Pflanzenbau und Pflanzenzuechtung, Technical University Munich, Am Hochanger 2, 85350 Freising, Germany FEATURES Location/Qualifiers source 1..740 /organism="Solanum tuberosum" /mitochondrion /db_xref="taxon:4113" CDS <1..>740 /note="orf577" /codon_start=3 /product="cytochrome c biogenesis protein" /translation="ILSFYGFLLCYRGRPLSHNVSKRGAESHLTVRRGAHRESFFYSF VSNFVKNSILSLPRYEQKSGMKSQLYTPFVLRTLVDSELRSRRNRTFDGPALFYAPLY PERKMSFAPLGARRSRGSREGKRMLHLARDDKERASSIDEQRIDGALGIALFFSPFLS ASSDPFVRNFFVCTEPLAESNPVPQDPISAIHPPCIYAGDVASAMGFGLCRSKMMNGI VALHSPPMRKDAAEKNGTLFRSVGCVGS" repeat_region 70..75 /note="involved with 30 nt insertion similar to coxI downstream region and to coxII intron presented in GenBank Accession Number AF096321" repeat_region 100..105 /note="involved with 30 nt insertion similar to coxI downstream region and to coxII intron presented in GenBank Accession Number AF096321" BASE COUNT 176 a 177 c 171 g 216 t ORIGIN 1 ggatcctaag tttttatgga ttccttcttt gttaccgggg tcgaccccta agccataatg 61 tctcaaaacg aggagctgaa agccacttga ctgtaaggag aggagcccat agagaaagtt 121 ttttttattc ctttgtttcg aacttcgtga agaactccat tctatctctc cctcgttacg 181 aacaaaaaag tggaatgaaa tcccagttat acactccctt cgttctacga acccttgttg 241 attctgaact tcgttcgcga aggaaccgga cttttgacgg gccagccctt ttttatgcgc 301 cgctttaccc tgaaaggaaa atgagctttg ctcctctggg cgctaggcgc tcccgtggtt 361 cgcgagaagg aaaaaggatg ttgcatctgg cacgagatga taaagagaga gcttcgtcta 421 tcgatgaaca gcggattgac ggagctcttg gcattgcttt gtttttctct cctttcctat 481 cagcgagttc cgaccctttt gttcgaaatt tcttcgtttg tactgaaccg cttgcagaat 541 caaatcctgt tccacaagat cctatatcag ctatacatcc tccttgcatt tatgccggag 601 acgtcgccag tgctatgggc tttggcttat gtagatcaaa aatgatgaat gggattgtgg 661 cactccactc gccgccaatg cggaaggatg ccgccgaaaa gaatggaaca ctgtttcgct 721 ctgttggatg cgtcggatcc //
LOCUS HAF1ATP 3564 bp DNA linear PLN 11-JUN-1998 DEFINITION Sunflower mitochondrial DNA for F1 ATPase (EC 3.6.1.3). ACCESSION X53537 VERSION X53537.1 GI:12577 KEYWORDS atpA gene; F1 ATPase. SOURCE mitochondrion Helianthus annuus (common sunflower) ORGANISM Helianthus annuus Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae; Helianthus. REFERENCE 1 (bases 1 to 2253) AUTHORS Kohler,R.H., Lossl,A. and Zetsche,K. TITLE Nucleotide sequence of the F1-ATPase alpha subunit gene of sunflower mitochondria JOURNAL Nucleic Acids Res. 18 (15), 4588 (1990) MEDLINE 90356396 PUBMED 2143817 REFERENCE 2 (bases 1 to 3564) AUTHORS Kohler,R.H., Horn,R., Lossl,A. and Zetsche,K. TITLE Cytoplasmic male sterility in sunflower is correlated with the co-transcription of a new open reading frame with the atpA gene JOURNAL Mol. Gen. Genet. 227 (3), 369-376 (1991) MEDLINE 91326025 PUBMED 1714033 REFERENCE 3 AUTHORS Yesodi,V., Hauschner,H., Tabib,Y. and Firon,N. TITLE An intact F1ATPase alpha-subunit gene and a pseudogene with differing genomic organization are detected in both male-fertile and CMS petunia mitochondria JOURNAL Curr. Genet. 32 (5), 348-357 (1997) MEDLINE 98041926 PUBMED 9371886 REFERENCE 4 AUTHORS Koehler,R.H. TITLE Direct Submission JOURNAL Submitted (15-JUN-1990) Koehler R.H., Institut fuer Pflanzenphysiologie, Heinrich-Buff-Ring 58-62, 6300 Giessen, FRG REMARK revised by [5] REFERENCE 5 AUTHORS Koehler,R.H. TITLE Direct Submission JOURNAL Submitted (15-AUG-1990) Koehler R.H REMARK revised by [5] REFERENCE 6 (bases 1 to 3564) AUTHORS Loessl,A. TITLE Direct Submission JOURNAL Submitted (29-OCT-1991) Institut fuer Pflanzenphysiologie, Heinrich-Buff-Ring 58-62, 6300 Giessen, FRG COMMENT For overlapping reference see <X04764>. FEATURES Location/Qualifiers source 1..3564 /organism="Helianthus annuus" /organelle="mitochondrion" /mol_type="genomic DNA" /strain="Baso" /db_xref="taxon:4232" /clone="HFS1,HFS0" /clone_lib="pUC18" /dev_stage="seedling" misc_feature 301..316 /note="homology to transcription initiantion site" repeat_region 439..477 /rpt_type=INVERTED misc_feature 788..806 /note="putative procession site" RBS 912..919 /note="potential" CDS 928..2460 /EC_number="3.6.1.3" /note="adenosinetriphosphatase" /codon_start=1 /product="F1 ATPase" /protein_id="CAA37613.1" /db_xref="GI:758362" /db_xref="GOA:P18260" /db_xref="SWISS-PROT:P18260" /translation="MEFSPRAAELTTLLESRISNFYTNFQVDEIGRVVSVGDGIARVY GLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAG KAMLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVP IGRGQRELIIGDRQTGKTAIAIDTILNQKQMNSRSTSESETLYCVYVAIGQKRSTVAQ LVQILSEANAMEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSK QAVAYRQMSLLLRRPPGREAFPGDVFYLHSRLLERAAKRSDQTGAGSLTALPVIETQA GDVSAYIPTNVIPITDGQICSETELFYRGIRPAINVGLSVSRVGSAAQLKTMKQVCGS SKLELAQYREVAALAQFGSDLDAATQALLNRGARLTEVPKQPQYAPLPIEKQILVIYA AVNGFCDRMPLDRISQYERAILKSIKTELLQSLLEKGGLTNERKMEPDTFLKECALPY TI" CDS 2625..3500 /note="unnamed protein product; orfH522" /codon_start=1 /protein_id="CAA37614.1" /db_xref="GI:758363" /db_xref="GOA:Q37789" /db_xref="SPTREMBL:Q37789" /translation="MPQLDKFTYFFRFTILPIFTMLLGRFLGTGCPGISTLLTLFFLI VTLLLIYRMRVSKRKKSSFLFFVILILIYVLCTFSRSFFIFMLAGMPSAFVWKVSSES GDATSLPPLESSSSSESLATFRAEIAAENEAEIFTRIRNLETQDYYNLPPQNNPGEYE VLVREEFEQALDVPHYRTVLDREYFELTVLERKGLLQDRLFHLMLGEQKISRIMELSP YQNIRMEAYNFLEASVEPVSALEHPFQKDLMEGTLNFFIKELTQNGRNSEIYKNFYIH FTDELFRVKLGLPLP" repeat_region 2779..2836 /rpt_type=INVERTED BASE COUNT 1035 a 733 c 755 g 1041 t ORIGIN 1 acctaacagt atatcagatc tatcctataa aggtagtcca acacaagtaa tcgatactac 61 gccttcgacc tttgagaagt tactttgtga aataggattg atcccttgta caatttcttc 121 attttagata gctagagcta agcctgtcct aagaatgagt cgggtaggac ctttcagtca 181 agtgccttgc cttccttgcc tattcattta gtccaacaat tgaaatacct attcgcattc 241 cttcccagtc cacttcgaaa gttactttgt tcagtcgata gatgcaatgc tgcgatggag 301 aaatctcata tgctctccaa cttgaaagac cttctcttcc ccctcttgga aacaggctag 361 cgatgaggag aaaagatgat gacaaacgaa ctgaaaactg cgaatgcttc taattcattg 421 aatcttattt tagaatccaa tttttttata tatatttatt ttatatatat atataaagca 481 gagtgatgtc tttatgacaa ttcgtcaagt ccgatcgaga aacctgcgcc caaagtgctt 541 acgtagccgg tcaccgtttg gctaagatcc ttgatgactg attcaaaaac cactctagct 601 tgatttcagt cttgtgttaa gtgttcgcat agcgactcag gtcctaacaa cttgatgtca 661 gactgttcaa catgagggac atctaactcc tctaacacag agaacataaa gactaggatt 721 agatgcttaa cataacgact cgtatgcttt cacgaaagaa gaaggagctc gcagacattt 781 aacaaaggat tgtgttggtg ttccgcgcgc tatctcaact cctagttcta gtagtacaag 841 ctcgaatctg atctataaga atagcggaaa tagagctctt tgaaattgaa agcggtattc 901 ccccttatat ccaaaatcag tagaatcatg gaattctctc cgagagctgc tgaactaacg 961 actctattag aaagtagaat tagcaacttt tacacgaatt ttcaagtgga tgagattggt 1021 cgagtggtct cagttggaga tgggattgca cgtgtttatg ggttgaacga gattcaagct 1081 ggggaaatgg ttgaatttgc cagcggtgtg aaaggaatag ccttgaatct tgagaatgag 1141 aatgtaggga ttgttgtctt tggtagtgat actgctatta aagaaggaga tcttgtcaag 1201 cgcactggct ctattgtgga tgtccctgcg ggaaaggcta tgctagggcg tgtggtcgac 1261 gccttgggag tacctattga tggaagaggg gctctaagcg atcacgagcg aagacgtgtc 1321 gaagtgaaag cccctgggat tattgaacgt aaatctgtgc acgagcctat gcaaactggg 1381 ttaaaagcgg tagatagcct ggttcctata ggccgtggtc aacgagaact tataatcggg 1441 gaccgacaaa ctggaaaaac agctattgct atcgatacca tattaaacca aaagcaaatg 1501 aactcaagga gcacctctga gagtgagaca ttgtattgtg tctatgtagc gattggacag 1561 aaacgctcaa ctgtggcaca attagttcaa attctttcag aagcgaatgc tatggaatat 1621 tccattcttg tagcagccac cgcttcggat cctgctcctc tgcaatttct ggccccgtat 1681 tctggctgtg ccatggggga atatttccgc gataatggaa tgcacgcatt aataatctat 1741 gatgatctta gtaaacaggc agtggcatat cgacaaatgt cattattgtt acgccgacca 1801 ccaggccgtg aggctttccc aggggatgtt ttctatttac attcccgtct cttagaaaga 1861 gccgctaaac gatcggacca gacaggcgca ggtagcttga ccgccttacc cgtcattgaa 1921 acacaagctg gagacgtatc agcctatatt cctactaatg tgatccccat tactgatgga 1981 caaatctgtt cggaaacaga gctcttttat cgcggaatta gacctgctat taacgtcggc 2041 ttatctgtca gtcgtgttgg gtctgccgct cagttgaaaa ctatgaaaca agtctgcggt 2101 agttcaaaac tggaattggc acaatatcgc gaagtggccg cccttgctca atttgggtca 2161 gacctggatg ctgcgactca ggcattactc aatagaggtg caaggcttac agaagtaccg 2221 aaacaaccac aatatgcacc acttccaatt gaaaaacaaa ttttagtcat ttatgcagct 2281 gtcaatggat tctgtgatcg aatgccacta gacagaattt ctcaatatga gagagccatt 2341 ttaaagagta taaaaacaga attactacaa tcccttttag aaaaaggtgg cttaactaac 2401 gaaagaaaaa tggaaccaga tacattctta aaggaatgcg ctttgcctta cacaatataa 2461 aaaagaaaaa gagaataaaa atagaaagat gaaggaacaa agttgacaca atccctttct 2521 ttccgttggt caacaaccaa caaaacaaaa tcgtttagtt cttcactact cgtacaggaa 2581 ggcctctctt tctgtatggg gggaatcctt tattctcaat caagatgcct caactggata 2641 aattcactta tttctttcgc tttactattt tgcctatttt cacaatgcta ctcggacgtt 2701 ttctaggaac gggctgcccc gggatttcca ccctattgac tttatttttt ttaatagtta 2761 ccctcctcct gatttatcga atgagagttt cgaagagaaa gaagagttct tttcttttct 2821 tcgtaattct cattctcatc tacgtgttat gtactttctc taggtctttt ttcattttta 2881 tgctggcagg aatgccaagt gcattcgttt ggaaagtctc ctccgaaagt ggagatgcaa 2941 caagtcttcc ccctttggag tcttcctcaa gcagtgaatc attggctacg tttagagccg 3001 aaatagcagc cgagaacgag gctgaaattt ttactcgcat acgcaatctt gagacccagg 3061 attactacaa ccttcctccc cagaataatc ctggggagta tgaggttctt gttagggaag 3121 aattcgagca agctctcgat gttccccatt atagaacggt cctggataga gaatattttg 3181 aactcacagt attagaaaga aagggtctat tgcaagatag gctcttccat cttatgcttg 3241 gtgagcaaaa gatttctcgt ataatggaac tttctccata tcaaaatatc cgtatggagg 3301 cctataattt ccttgaggct tctgtggagc cggtgagcgc tttagagcat ccttttcaga 3361 aggatctgat ggaaggtact ttgaatttct ttatcaagga attaacccaa aatgggagaa 3421 attccgaaat ctataagaat ttttatatac acttcacaga tgaactgttc cgcgtgaagt 3481 tgggattacc tctcccttaa tatgatattc tttttgcgct cttggtcttc gaactagtca 3541 ttaatggtcg gcttcattgg tacc //
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